Publications

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Near real-time forecasting for cholera decision making in Haiti after Hurricane Matthew.

Abstract

Computational models of cholera transmission can provide objective insights into the course of an ongoing epidemic and aid decision making on allocation of health care resources.

Pasetto D Finger F Camacho A Grandesso F Cohuet S Lemaitre JC Azman AS Luquero FJ Bertuzzo E Rinaldo A
PLoS computational biology 2018 05 ; 14(5); e1006127. doi: 10.1371/journal.pcbi.1006127. Epub 2018 05 16

Highly targeted cholera vaccination campaigns in urban setting are feasible: The experience in Kalemie, Democratic Republic of Congo.

Abstract

INTRODUCTION: Oral cholera vaccines are primarily recommended by the World Health Organization for cholera control in endemic countries.

Massing LA Aboubakar S Blake A Page AL Cohuet S Ngandwe A Mukomena Sompwe E Ramazani R Allheimen M Levaillant P Lechevalier P Kashimi M de la Motte A Calmejane A Bouhenia M Dabire E Bompangue D Kebela B Porten K Luquero F
PLoS neglected tropical diseases 2018 05 ; 12(5); e0006369. doi: 10.1371/journal.pntd.0006369. Epub 2018 05 07

Brief Report: Higher ART Adherence Is Associated With Lower Systemic Inflammation in Treatment-Naive Ugandans Who Achieve Virologic Suppression.

Abstract

BACKGROUND: Residual systemic inflammation persists despite suppressive antiretroviral therapy (ART) and is associated with non-AIDS clinical outcomes.

Castillo-Mancilla JR Morrow M Boum Y Byakwaga H Haberer JE Martin JN Bangsberg D Mawhinney S Musinguzi N Huang Y Tracy RP Burdo TH Williams K Muzzora C Hunt PW Siedner MJ
Journal of acquired immune deficiency syndromes (1999) 2018 Apr 15; 77(5); 507-513. doi: 10.1097/QAI.0000000000001629. Epub 2018 11 13

Characteristics of human encounters and social mixing patterns relevant to infectious diseases spread by close contact: a survey in Southwest Uganda.

Abstract

BACKGROUND: Quantification of human interactions relevant to infectious disease transmission through social contact is central to predict disease dynamics, yet data from low-resource settings remain scarce.

le Polain de Waroux O Cohuet S Ndazima D Kucharski AJ Juan-Giner A Flasche S Tumwesigye E Arinaitwe R Mwanga-Amumpaire J Boum Y Nackers F Checchi F Grais RF Edmunds WJ
BMC infectious diseases 2018 04 11; 18(1); 172. doi: 10.1186/s12879-018-3073-1. Epub 2018 04 11
Close contact transmission Infectious diseases Social contact Survey Uganda

Comparison of different treatments for isoniazid-resistant tuberculosis: an individual patient data meta-analysis.

Abstract

BACKGROUND: Isoniazid-resistant, rifampicin-susceptible (INH-R) tuberculosis is the most common form of drug resistance, and is associated with failure, relapse, and acquired rifampicin resistance if treated with first-line anti-tuberc

Fregonese F Ahuja SD Akkerman OW Arakaki-Sanchez D Ayakaka I Baghaei P Bang D Bastos M Benedetti A Bonnet M Cattamanchi A Cegielski P Chien JY Cox H Dedicoat M Erkens C Escalante P Falzon D Garcia-Prats AJ Gegia M Gillespie SH Glynn JR Goldberg S Griffith D Jacobson KR Johnston JC Jones-López EC Khan A Koh WJ Kritski A Lan ZY Lee JH Li PZ Maciel EL Galliez RM Merle CSC Munang M Narendran G Nguyen VN Nunn A Ohkado A Park JS Phillips PPJ Ponnuraja C Reves R Romanowski K Seung K Schaaf HS Skrahina A Soolingen DV Tabarsi P Trajman A Trieu L Banurekha VV Viiklepp P Wang JY Yoshiyama T Menzies D
The Lancet. Respiratory medicine 2018 04 ; 6(4); 265-275. doi: 10.1016/S2213-2600(18)30078-X. Epub 2018 10 19

Syrian refugees in Greece: experience with violence, mental health status, and access to information during the journey and while in Greece.

Abstract

BACKGROUND: Since 2015, Europe has been facing an unprecedented arrival of refugees and migrants: more than one million people entered via land and sea routes.

Ben Farhat J Blanchet K Juul Bjertrup P Veizis A Perrin C Coulborn RM Mayaud P Cohuet S
BMC medicine 2018 03 13; 16(1); 40. doi: 10.1186/s12916-018-1028-4. Epub 2018 03 13
Access Europe Greece Journey Mental health Migrants Refugees Syria Violence

High Proportions of Patients With Advanced HIV Are Antiretroviral Therapy Experienced: Hospitalization Outcomes From 2 Sub-Saharan African Sites.

Abstract

Background: Human immunodeficiency virus (HIV) remains an important cause of hospitalization and death in low- and middle- income countries.

Ousley J Niyibizi AA Wanjala S Vandenbulcke A Kirubi B Omwoyo W Price J Salumu L Szumilin E Spiers S van Cutsem G Mashako M Mangana F Moudarichirou R Harrison R Kalwangila T Lumowo G Lambert V Maman D
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Mar 04; 66(suppl_2); S126-S131. doi: 10.1093/cid/ciy103. Epub 2018 11 14

Progress towards the UNAIDS 90-90-90 goals by age and gender in a rural area of KwaZulu-Natal, South Africa: a household-based community cross-sectional survey.

Abstract

BACKGROUND: The Joint United Nations Programme on HIV/AIDS (UNAIDS) has developed an ambitious strategy to end the AIDS epidemic.

Huerga H Van Cutsem G Ben Farhat J Puren A Bouhenia M Wiesner L Dlamini L Maman D Ellman T Etard JF
BMC public health 2018 03 02; 18(1); 303. doi: 10.1186/s12889-018-5208-0. Epub 2018 03 02
Africa Cascade of care HIV UNAIDS targets Viral load

The epidemiology of adolescents living with perinatally acquired HIV: A cross-region global cohort analysis.

Abstract

BACKGROUND: Globally, the population of adolescents living with perinatally acquired HIV (APHs) continues to expand.

Slogrove AL Schomaker M Davies MA Williams P Balkan S Ben-Farhat J Calles N Chokephaibulkit K Duff C Eboua TF Kekitiinwa-Rukyalekere A Maxwell N Pinto J Seage G Teasdale CA Wanless S Warszawski J Wools-Kaloustian K Yotebieng M Timmerman V Collins IJ Goodall R Smith C Patel K Paul M Gibb D Vreeman R Abrams EJ Hazra R Van Dyke R Bekker LG Mofenson L Vicari M Essajee S Penazzato M Anabwani G Q Mohapi E N Kazembe P Hlatshwayo M Lumumba M Goetghebuer T Thorne C Galli L van Rossum A Giaquinto C Marczynska M Marques L Prata F Ene L Okhonskaia L Rojo P Fortuny C Naver L Rudin C Le Coeur S Volokha A Rouzier V Succi R Sohn A Kariminia A Edmonds A Lelo P Ayaya S Ongwen P Jefferys LF Phiri S Mubiana-Mbewe M Sawry S Renner L Sylla M Abzug MJ Levin M Oleske J Chernoff M Traite S Purswani M Chadwick EG Judd A Leroy V
PLoS medicine 2018 03 ; 15(3); e1002514. doi: 10.1371/journal.pmed.1002514. Epub 2018 03 01